BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB037C07LP1|AL430365
(852 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig314 1598 0.0
>3x_Contig314
Length = 1574
Score = 1598 bits (804), Expect = 0.0
Identities = 816/820 (99%), Gaps = 1/820 (0%)
Strand = Plus / Minus
Query: 1 gatcatcttccacagcgatttctctgtttttcttgtcgtgaagtgagagaaagagctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 gatcatcttccacagcgatttctctgtttttcttgtcgtgaagtgagagaaagagctcag 898
Query: 61 tgaaa-tttttactacaggtttcaatgtgaaattagtcacgaatcgttcgtaatgcctcg 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tgaaactttttactacaggtttcaatgtgaaattagtcacgaatcgttcgtaatgcctcg 838
Query: 120 tgactcgaagccggttccggaacaaaatatccttctgcaccatctaaagacagtagagga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tgactcgaagccggttccggaacaaaatatccttctgcaccatctaaagacagtagagga 778
Query: 180 ttttgcacggtagaatatttcgcattgcttgaacggataagctatacagtatcaatgatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ttttgcacggtagaatatttcgcattgcttgaacggataagctatacagtatcaatgatc 718
Query: 240 gagaagatatgatattgttggaagtgtttcttgtggatcattgtgtctacgagatttttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gagaagatatgatattgttggaagtgtttcttgtggatcattgtgtctacgagatttttt 658
Query: 300 gtgcaaaacctctgtttcttcgacacttcccacgtcctctggattatgaagggtgttgag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gtgcaaaacctctgtttcttcgacacttcccacgtcctctggattatgaagggtgttgag 598
Query: 360 cattattcggtcactcctcagacgaagcaggaagggaaggatacggagctttgcgtatga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cattattcggtcactcctcagacgaagcaggaagggaaggatacggagctttgcgtatga 538
Query: 420 agaggctttattaatttcagtaccgttcctgaatgctccgatgtcacgaatgttcagtaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agaggctttattaatttcagtaccgttcctgaatgctccgatgtcacgaatgttcagtaa 478
Query: 480 agttggtcgaatttaatgcaatccggaatagtactttatcatctgtgattaaactttgga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agttggtcgaatttaatgcaatccggaatagtactttatcatctgtgattaaactttgga 418
Query: 540 gagtaagattgaagaatttggagttagggattctctaaattatagtagtacaaagacgta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gagtaagattgaagaatttggagttagggattctctaaattatagtagtacaaagacgta 358
Query: 600 ttgaaataaagaaagaagattattttggccgagaaaacaaatgctatgaaaatttggaac 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ttgaaataaagaaagaagattattttggccgagaaaacaaatgctatgaaaatttggaac 298
Query: 660 tatcactatgatactttatttagtactacaatatcacctcaatgaggtgtacaacgcacc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tatcactatgatactttatttagtactacaatatcacctcaatgaggtgtacaacgcacc 238
Query: 720 gcagtccaaacagtagtatttcacgttttgaggagcttgattgaacgacagtttttkatc 779
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 237 gcagtccaaacagtagtatttcacgttttgaggagcttgattgaacgacagtgtttgatc 178
Query: 780 agttkcaaaccgtgttcctccacatacattacaaacccta 819
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 177 agttgcaaaccgtgttcctccacatacattacaaacccta 138
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8146
Number of Sequences: 1807
Number of extensions: 8146
Number of successful extensions: 186
Number of sequences better than 1.0e-20: 1
length of query: 852
length of database: 10,358,551
effective HSP length: 16
effective length of query: 836
effective length of database: 10,329,639
effective search space: 8635578204
effective search space used: 8635578204
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)